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Subjects nucleotide sequences Remove constraint nucleotide sequences: nucleotide sequences Subjects genome Remove constraint genome: genome Subjects Oryza sativa Remove constraint Oryza sativa: Oryza sativa

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1. A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat

Description:: Includes references
Author:: Gu, Yong Q. , Ma, Yaqin , Huo, Naxin , Vogel, John P. , You, Frank M. , Lazo, Gerard R. , Nelson, William M. , Soderlund, Carol , Dvorak, Jan , Anderson, Olin D. , Luo, Ming-Cheng
Subject:: Brachypodium distachyon , genome , physical chromosome mapping , bacterial artificial chromosomes , clones , DNA profiling , nucleotide sequences , sequence homology , Oryza sativa , rice , Triticum aestivum , wheat , species differences , gene duplication
Collection:: Journal Articles, USDA Authors, Peer-Reviewed
Year:: 2009

2. Comparative Transcriptional Profiling of Two Contrasting Rice Genotypes under Salinity Stress during the Vegetative Growth Stage

Description:: Includes references
Author:: Walia, Harkamal , Wilson, Clyde , Condamine, Pascal , Liu, Xuan , Ismail, Abdelbagi M. , Zeng, Linghe , Wanamaker, Steve I. , Mandal, Jayati , Xu, Jin , Cui, Xinping , Close, Timothy J.
Subject:: Oryza sativa , rice , genetic variation , genotype , vegetative growth , salt tolerance , genome , transcription (genetics) , gene expression regulation , plant genetics , salt stress , phenotypic variation , flavonoids , plant physiology , plant biochemistry , nucleotide sequences
Collection:: Journal Articles, USDA Authors, Peer-Reviewed
Year:: 2005

3. Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza

Description:: Includes references
Author:: Kim, HyeRan , Hurwitz, Bonnie , Yu, Yeisoo , Collura, Kristi , Gill, Navdeep , SanMiguel, Phillip , Mullikin, James C. , Maher, Christopher , Nelson, William , Wissotski, Marina , Braidotti, Michele , Kudrna, David , Goicoechea, José Luis , Stein, Lincoln , Ware, Doreen , Jackson, Scott A. , Soderlund, Carol , Wing, Rod A.
Subject:: Oryza , genome , physical chromosome mapping , bacterial artificial chromosomes , DNA profiling , nucleotide sequences , sequence analysis , sequence alignment , Oryza sativa , transposons , microsatellite repeats , antisense RNA , single nucleotide polymorphism
Collection:: Journal Articles, USDA Authors, Peer-Reviewed
Year:: 2008

4. Phylogenomic Analysis of BAC-end Sequence Libraries in Oryza (Poaceae)

Description:: Includes references
Author:: Cranston, Karen A. , Hurwitz, Bonnie , Sanderson, Michael J. , Ware, Doreen , Wing, Rod A. , Stein, Lincoln
Subject:: Oryza , Oryza sativa , rice , bacterial artificial chromosomes , nucleotide sequences , DNA libraries , phylogeny , molecular systematics , genome , genomics , wild relatives , sequence alignment , data analysis
Collection:: Journal Articles, USDA Authors, Peer-Reviewed
Year:: 2010

5. Validation of rice genome sequence by optical mapping

Description:: Includes references
Author:: Zhou, S. , Bechner, M.C. , Place, M. , Churas, C.P. , Pape, L. , Leong, S.A. , Runnheim, R. , Forrest, D.K. , Goldstein, S. , Livnyu, M.
Subject:: Oryza sativa , rice , genome , nucleotide sequences , physical chromosome mapping , restriction mapping
Collection:: Journal Articles, USDA Authors, Peer-Reviewed
Year:: 2007