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Methanotrophic activity, abundance, and diversity in forested swamp pools: spatiotemporal dynamics and influences on methane fluxes

Permanent URL:
http://handle.nal.usda.gov/10113/16957
Abstract:
Methane oxidation (methanotrophy) in the water column and sediments of forested swamp pools likely control seasonal and annual emission of CH4 from these systems, but the methanotrophic microbial communities, their activities, locations, and overall impact, is poorly understood. Several techniques including 14CH4 oxidation assays, culture-based most probable number (MPN) estimates of methane-oxidizing bacteria (MOB) and protozoan abundance, MOB strain isolation and characterization, and PCR techniques were used to investigate methanotrophy at a forested swamp near Ithaca, New York. The greatest methanotrophic activity and largest numbers of MOB occurred predominantly at the low oxygen sediment/water interface in the water column. Seasonally, methanotrophic activity was very dynamic, ranging from 0.1 to 61.9 micromoles CH4 d-1g-1 dry sediment, and correlated most strongly with dissolved inorganic carbon (r=0.896). Incorporation of methanotrophic variables (abundance and activity) into existing CH4 flux regression models improved model fit, particularly during mid summer when CH4 fluxes were most dynamic. Annually integrated methane flux and methanotrophic activity measurements indicate that differences in methanotrophic activity at the sediment/water interface likely accounted for differences in the annual CH4 emission from the field site. Direct isolations of MOB resulted in the repeated isolation of organisms most closely related to Methylomonas methanica S1. A single acidophilic, type II MOB related to Methylocella palustris K was also isolated. Using a PCR-based MPN method and 16S rRNA genome copy number from isolates and control strains, type I and type II MOB were enumerated and revealed type I dominance of the sediment-associated MOB community.
Author(s):
Miller, D.N. , Yavitt, J.B. , Madsen, E.L. , Ghiorse, W.C.
Subject(s):
methanotrophs , microbial activity , methane , methane production , soil bacteria , swamps , gas emissions , lowland forests , seasonal variation , temporal variation , spatial variation , Protozoa , sediments , statistical models , polymerase chain reaction , sequence analysis , population size , population dynamics , microbial ecology , New York
Format:
p. 257-271.
Note:
Includes references
Source:
Geomicrobiology journal 2004 June, v. 21, no. 4
Language:
English
Year:
2004
Collection:
Journal Articles, USDA Authors, Peer-Reviewed
File:
Download [PDF File]
Rights:
Works produced by employees of the U.S. Government as part of their official duties are not copyrighted within the U.S. The content of this document is not copyrighted.